You seek "alternative medication" for high cholesterol, but as Edmund Hayes point outs, you don't mention if you are seeking an alternative medication to the one you are currently taking or perhaps a "natural" alternative to medication.
I will assume you are seeking a non-medication alternative for high cholesterol and other risk factors for cardiovascular disease. For that, consider the research implicating several vitamin and mineral deficiencies, many of which are been associated not only with high cholesterol but also with high blood pressure, diabetes, and other risk factors for cardiovascular disease.
1. B vitamins.
In particular, Niacin (also known as vitamin B-3) can increase HDL or "good" cholesterol levels. You can take a supplement or find it in dairy products, eggs, fowl, fish, lean meats, and nuts. While some sources recommend niacin in isolation, know that this can create a "niacin flush," which other sources say is ill-advised, especially in regard to organ damage. Note that the non-flush types of niacin apparently do not have the same effect on HDL.
Folic acid (also a B vitamin) regulates homocysteine, a suspected marker for heart disease.
Rather than taking individual B vitamins, however, the conservative recommendation is to take a full B-complex supplement, since the Bs work better in combination and several other Bs are important in lowering homocysteine; not just folic acid.
2. Magnesium - Many studies have linked magnesium deficiency to high blood pressure, and some studies have linked magnesium supplementation to a decreased risk of death from heart disease. Magnesium is known as a natural calcium channel blocker. It balances excess calcium that can cause muscle spasms in the heart (a heart attack).
Magnesium also may reduce the risk of developing type 2 diabetes. The American Heart Association names diabetes as a major risk factor for cardiovascular disease.
Magnesium research scientist Mildred Seelig writes about magnesium and disease in her 1980 book MAGNESIUM DEFICIENCY IN THE PATHOGENESIS OF DISEASE: Early Roots of Cardiovascular, Skeletal. and Renal Abnormalities, Mildred S. Seelig, M.D., M.P.H., F.A.C.N.
New York University Medical Center. It is available online here:
http://www.mgwater.com/Seelig/Magnesium-Deficiency-in-the-Pathogenesis-of-Disease/chapter5.shtml
You can learn more about magnesium's role in maintaining health and preventing disease at the website of the Nutritional Magnesium Association. This page lists several magnesium research studies:
http://www.nutritionalmagnesium.org/index.php?page=Research+Studies
I hope you find this information helpful.